Publications etc.


[By Topic][Chronological]

Data Science and Software Engineering in Computational Biomedicine

  • Gopal Sarma and Victor Faundez, “Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices”, Cellular Logistics 7(4) (2017). [Journal]
  • Gopal P. Sarma, “Collecting Systematic, Introspective Reports of Pharmacological Effects and Side-Effects” (2016). [Preprint]
  • Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, and Rick C. Gerkin, “Unit Testing, Model Validation, and Biological Simulation”, F1000Research 5:1946 (2016). [Journal][Preprint]

Artificial Intelligence, AI Safety, and AI Governance

  • Gopal P. Sarma, Nick J. Hay, and Adam Safron, “AI Safety and Reproducibility: Establishing Robust Foundations for the Neuroscience of Human Values” (2017). [Preprint]
  • Gopal P. Sarma and Nick J. Hay, “Robust Computer Algebra, Theorem Proving, and Oracle AI”, Informatica 41(3) (2017). [Journal][Preprint]
  • Gopal P. Sarma, “Brief Notes on Hard Takeoff, Value Alignment, and Coherent Extrapolated Volition” (2017). [Preprint]
  • Gopal P. Sarma and Nick J. Hay, “Mammalian Value Systems”, Informatica 41(3) (2017). [Journal][Preprint]

Science Policy

  • Gopal P. Sarma, “Doing Things Twice: Strategies to Identify Studies for Targeted Validation” (2017). [Preprint]
  • Gopal P. Sarma, “Scientific Literature Text Mining and the Case for Open Access”, The Journal of Open Engineering (2017). [Journal]
  • Gopal Sarma, “Scientific Auditing Firms”, Progress 05(2016). [Journal]
    (A shorter version of this article is available at Economic and Social Impacts of Innovation 05(2016). [Journal][Preprint])
  • Gopal Sarma, “Training Scientific Generalists: Response to Comments and Additional Thoughts”, The Winnower 05(2016). [Journal]
  • Gopal Sarma, “Is There Value in Training Scientific Generalists For Positions at the Edge of Academia?”, The Winnower 03(2016). [Journal]
  • Gopal Sarma, “Should We Train Scientific Generalists?”, The Winnower 01(2016). [Journal][Preprint]

History and Philosphy of Science, Philosophy of Mind

  • Gopal Sarma, “Reductionism and the Universal Calculus”, submitted (2016). [Preprint]
  • Gopal Sarma, “Reconsidering Written Language”, Interdisciplinary Description of Complex Systems 13(3) (2015). [Journal][Preprint]
  • Gopal Sarma, “The Art of Memory and the Growth of the Scientific Method”, Interdisciplinary Description of Complex Systems 13(3) (2015). [Journal][Preprint]
  • Gopal Sarma, “A simple technique to record mental events,” Journal of Consciousness Studies 22(7-8) (2015). [Journal]

Theoretical Physics / Quantum Computing

  • Gopal Sarma, Engineering Quantum Systems with Coherent Feedback Control, PhD thesis, Stanford University (2013).
  • Gopal Sarma and Hideo Mabuchi, “Gauge subsystems, separability, and robustness in autonomous quantum memories,” New Journal of Physics 15, 035014 (2013). [Journal][Preprint]
  • Gopal Sarma, Ryan Hamerly, Nikolas Tezak, Dmitri S. Pavlichin, and Hideo Mabuchi, “Transformation of photonic circuit models by term-rewriting,” IEEE Photonics 5, 1 (2013). [Journal][Preprint]
  • Nikolas Tezak, Armand Niederberger, Dmitri S. Pavlichin, Gopal Sarma and Hideo Mabuchi, “Specification of photonic circuits using Quantum Hardware Description Language,” Phil. Trans. Roy. Soc. A 370 5270-5290 (2012). [Journal][Preprint]
  • Gopal Sarma, Andrew Silberfarb, and Hideo Mabuchi, “A quantum stochastic calculus approach to modeling double-pass atom-field coupling,” Phys. Rev. A 78, 025801, (2008). [Journal][Preprint]
  • Luc Bouten, John Stockton, Gopal Sarma and Hideo Mabuchi, “Scattering of polarized laser light by an atomic gas in free space: a QSDE approach,” Phys. Rev. A 75, 052111, (2007). [Journal][Preprint]

Invited Talks

  • “Building smart applications.” Panel discussion with developers from Wolfram Research and IBM Watson. RoboUniverse Conference & Expo. New York, 2015.
  • “The importance of data curation.” Ontario Brain Institute Brain-CODE Workshop on Neuroinformatics. Toronto, 2014.
  • “QHDL: A Quantum Hardware Description Language for Nanophotonics.” Stanford Photonics Research Center. Palo Alto, 2011.

Posters & Abstracts

  • Gopal P. Sarma and Edward M. Gotlieb, “Self-Injurious Behavior in a 30 Month Old Female,”submitted (2016).
  • Gopal Sarma, “Robustness of Autonomous Quantum Memories,” Principles and Applications of Control in Quantum Systems. Tokyo, 2012.
  • Dmitri S. Pavlichin, Michael Armen, Charles Limouse, Joseph Kerckhoff, Gopal Sarma, Michael Zhang, and Hideo Mabuchi, “Bayesian 3-D Fluorescence Tracking and Coherent Feedback Control for Quantum Error Correction,” Stanford Photonics Research Center. Monterrey, 2012.
  • Luc Bouten, Ramon Van Handel, Anthony Miller, Gopal Sarma, and Hideo Mabuchi, Quantum Parameter Estimation With Cold Atomic Spins,” Quantum-Atom Optics Downunder. Munich, 2007.
  • Anthony Miller, John Stockton, Magnus Hsu, Orion Crisafulli, Gopal Sarma, Luc Bouten, Andrew Silberfarb, and Hideo Mabuchi, “Quantum Measurement and Feedback Control,” European Conference on Lasers and Electro-Optics and the International Quantum Electronics Conference. Wollongong, 2007.
  • Farshad Moradi, Christof Koch, Shinsuke Shimojo, Gopal Sarma, and Joel Gutierrez, “Adaptation to face identity and emotional expression depends on attention,” Vision Sciences Society Annual Meeting. Sarasota, 2005.